SkillHealthcare & Life Sciences
🦖 Lit Synthesizer
Search PubMed and bioRxiv, summarise papers with LLM, build citation graphs, and generate literature review sections.
◈OpenClaw
By beita6969Original project
815 GitHub starsMIT · FreeView skill
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Prompts and skills1452 resources
SkillHealthcare & Life Sciences
Biomni
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction,...
◈OpenClaw
By MicrockOriginal project
224 GitHub starsMIT · FreeView skill
SkillHealthcare & Life Sciences
ToolUniverse
Use this skill when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discovery. This skill provides access to 600+ scientific tools including machine learning models, datasets, APIs, and analysis packag...
✳Claude Code
By MicrockOriginal project
224 GitHub starsMIT · FreeView skill
SkillHealthcare & Life Sciences
MaxQuant + Perseus — Proteomics Analysis Pipeline
MaxQuant + Perseus proteomics pipeline: run MaxQuant for LFQ and SILAC; parse proteinGroups.txt in Python; filter contaminants/decoys; log2 + median-normalize; impute MNAR; t-test with FDR; volcano plot; GO/pathway enrichment. Use Proteome Discoverer for Thermo-native processing; FragPipe/MSFragg...
◈OpenClaw
By jaechang-hitsOriginal project
199 GitHub starsCC-BY-4.0 · FreeView skill
SkillHealthcare & Life Sciences
PyOpenMS — Mass Spectrometry Analysis
MS data processing with PyOpenMS for LC-MS/MS proteomics and metabolomics — mzML/mzXML I/O, signal processing (smoothing, peak picking, centroiding), feature detection/linking, peptide/protein ID with FDR, untargeted metabolomics. Use matchms for simple spectral matching.
✳Claude Code>_Codex◈OpenClaw+1
By jaechang-hitsOriginal project
199 GitHub starsCC-BY-4.0 · FreeView skill
SkillHealthcare & Life Sciences
TCGA Gene Expression Analysis
Retrieve gene expression data from TCGA (The Cancer Genome Atlas) to analyze cancer-specific expression patterns.
◈OpenClaw
By SpectrAI-InitiativeOriginal project
380 GitHub starsApache-2.0 · FreeView skill
SkillHealthcare & Life Sciences
sgRNA Design Guide: Three-Tiered Approach
Three-tiered sgRNA design guide using validated Addgene sequences, CRISPick pre-computed datasets, or de novo design rules for CRISPR experiments
✳Claude Code>_Codex◈OpenClaw+1
By jaechang-hitsOriginal project
199 GitHub starsCC-BY-4.0 · FreeView skill
SkillHealthcare & Life Sciences
database-lookup
Search 78 public scientific, biomedical, materials science, and economic databases via their REST APIs and return structured JSON results. Covers physics/astronomy (NASA, NIST, SDSS, SIMBAD, Exoplanet Archive), earth/environment (USGS, NOAA, EPA, OpenWeatherMap), chemistry/drugs (PubChem, ChEMBL,...
◈OpenClaw
By mkurmanOriginal project
326 GitHub starsMIT · FreeView skill
SkillHealthcare & Life Sciences
Scanpy Single-Cell RNA-seq Analysis
scRNA-seq with Scanpy: QC, normalization, HVG selection, PCA, neighborhood graph, UMAP/t-SNE, Leiden clustering, markers, cell annotation, trajectory inference. Standard scRNA-seq exploration.
◈OpenClaw
By jaechang-hitsOriginal project
199 GitHub starsCC-BY-4.0 · FreeView skill
SkillHealthcare & Life Sciences
📊 MultiQC
Aggregates QC reports from any bioinformatics tool outputs (FastQC, fastp, STAR, Picard, samtools, etc.) into
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillHealthcare & Life Sciences
🧬 Mendelian Randomisation
Two-sample Mendelian Randomisation from GWAS summary statistics with IVW, MR-Egger, weighted median/mode, and
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillHealthcare & Life Sciences
Two-sample t-test
Medical biostatistics hypothesis testing toolkit: t-tests, ANOVA, chi-square, Fisher exact, Mann-Whitney, Kruskal-Wallis, sample size calculation, power analysis, multiple testing correction, survival analysis, and clinical trial biostatistics.
✳Claude Code>_Codex◈OpenClaw+1
By mkurmanOriginal project
326 GitHub starsMIT · FreeView skill
SkillHealthcare & Life Sciences
🎯 Target Validation Scorer
Evidence-grounded target validation scoring with GO/NO-GO decisions for drug discovery campaigns
◈OpenClaw
By Heng Gao <heng.gao25@imperial.ac.uk>Original project
MIT · FreeView skill
SkillHealthcare & Life Sciences
Med-Researcher Guide
Multi-agent system for biomedical literature review and synthesis
◈OpenClaw
By wentoraiOriginal project
307 GitHub starsMIT · FreeView skill
SkillHealthcare & Life Sciences
🦖 scRNA Orchestrator
Local Scanpy pipeline for single-cell RNA-seq QC, optional doublet detection, clustering, marker discovery, optional CellTypist annotation, optional latent downstream mode from integrated.h5ad/X_scvi, and optional two-group contrastive marker analysis from raw-count .h5ad or 10x Matrix Market input.
◈OpenClaw
By Yonghao ZhaoOriginal project
MIT · FreeView skill
SkillHealthcare & Life Sciences
🧬 Variant Annotation
Annotate VCF variants with Ensembl VEP REST, ClinVar significance, gnomAD/population frequency context, and prioritized variant ranking.
◈OpenClaw
By Toby ClarkOriginal project
MIT · FreeView skill
SkillHealthcare & Life Sciences
Epigenetics & Drug Response
Epigenetics & Drug Response - Link epigenetics to drug response: gene regulation, variant effects, drug interactions, and expression. Use this skill for epigenetic pharmacology tasks involving get overlap region get vep hgvs get drug interactions by drug name get gene expression across cancers. C...
◈OpenClaw
By SpectrAI-InitiativeOriginal project
380 GitHub starsApache-2.0 · FreeView skill
SkillHealthcare & Life Sciences
Gene-to-Drug Discovery Pipeline
Gene-to-Drug Discovery Pipeline - Full gene-to-drug pipeline: gene lookup, protein structure, binding pocket, virtual screening, and drug-likeness. Use this skill for translational medicine tasks involving get gene metadata by gene name pred protein structure esmfold run fpocket boltz binding aff...
◈OpenClaw
By SpectrAI-InitiativeOriginal project
380 GitHub starsApache-2.0 · FreeView skill
SkillHealthcare & Life Sciences
Shotgun Metagenomics Profiler
Shotgun metagenomics profiling — taxonomy, resistome, and functional pathways
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillHealthcare & Life Sciences
CellTypist Cell Type Annotation
Automated scRNA-seq cell type annotation via pre-trained logistic regression. 45+ models: immune, gut, lung, brain, fetal, cancer microenvironments. Input normalized AnnData; outputs per-cell labels, majority-vote cluster labels, confidence scores. Use for fast, reference-backed annotation withou...
✳Claude Code>_Codex◈OpenClaw+1
By jaechang-hitsOriginal project
199 GitHub starsMIT · FreeView skill
SkillHealthcare & Life Sciences
dbSNP Database
Query NCBI dbSNP for SNP records by rsID, gene, or region via E-utilities and Variation Services REST API. Retrieve alleles, MAF, variant class (SNV/indel/MNV), clinical links, cross-DB IDs (ClinVar, dbVar, 1000G). Free; 3 req/sec (10 with key). For clinical pathogenicity use clinvar-database; fo...
◈OpenClaw
By jaechang-hitsOriginal project
199 GitHub starsCC0-1.0 · FreeView skill
SkillHealthcare & Life Sciences
GSEApy — Gene Set Enrichment Analysis in Python
GSEA and over-representation analysis (ORA) for RNA-seq and proteomics. Wraps Enrichr for ORA against MSigDB, KEGG, GO, and 200+ databases; runs preranked GSEA on ranked DE gene lists. Outputs enrichment tables and running-score plots. Use after DESeq2 or edgeR for pathway-level interpretation.
◈OpenClaw
By jaechang-hitsOriginal project
199 GitHub starsMIT · FreeView skill
SkillHealthcare & Life Sciences
🦖 Equity Scorer
Compute HEIM diversity and equity metrics from VCF or ancestry data. Generates heterozygosity, FST, PCA plots,
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillHealthcare & Life Sciences
🧬 nfcore-rnaseq-wrapper
Wrapper skill for running nf-core/rnaseq bulk RNA-seq preprocessing from FASTQ or BAM inputs with strict preflight, reproducibility outputs, and downstream handoff to ClawBio bulk RNA-seq DE skills.
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
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