SkillDesign
Motion Pipeline Skill
CPU-only motion data processing pipeline for game animation: BVH import, contact detection, root decomposition, motion blending, FABRIK IK. No GPU required.
◈OpenClaw
By notqueOriginal project
MIT · FreeView skill
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SkillData & Analytics
Microbiome Diversity Reporter
Interpret Alpha and Beta diversity metrics from 16S rRNA sequencing results.
✳Claude Code>_Codex◈OpenClaw+1
By aipochOriginal project
MIT · FreeView skill
SkillDesign
Image Subject Assets
Image processing and design asset generation. Use when given a single ordinary image and asked to extract the main subject, clean it to a transparent PNG, or adapt it into Apple platform assets such as Mac menu bar icons, app icons, Spotlight/Settings icons, App Store screenshots, iMessage icons,...
◈OpenClaw
By SemiStackOriginal project
MIT · FreeView skill
SkillEducation & Research
Immunogenicity Scoring
Rank and prioritize neoantigen/epitope candidates by likely T-cell response using NeoFox feature annotation, PRIME2.0, BigMHC-IM, the Łuksza/Balachandran fitness model (agretopicity + foreignness), and pVACtools tiering. Encodes the field's hard truths that immunogenicity is the least-solved laye...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Pydicom Medical Imaging
Pure Python DICOM for medical imaging (CT, MRI, X-ray, ultrasound). Read/write DICOM, pixels as NumPy, edit tags, windowing (VOI LUT), PHI anonymization, build DICOM, series→3D volumes. Use histolab for WSI pathology; nibabel for NIfTI.
◈OpenClaw
By jaechang-hitsOriginal project
MIT · FreeView skill
SkillData & Analytics
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Differential gene expression analysis for bulk RNA-seq count matrices using a DESeq2-like workflow in Python; use when you need Wald tests, FDR correction, and optional LFC shrinkage for condition/batch/covariate designs.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
biopython-advanced
Advanced Biopython modules for motifs, population genetics, sequence utilities, restriction analysis, clustering, and GenomeDiagram visualization; use when you need extended bioinformatics analysis beyond basic sequence I/O and alignment.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
biopython-alignment
Sequence alignment and alignment file processing with Biopython (Bio.Align/Bio.AlignIO), triggered when you need global/local pairwise alignment, MSA read/write/format conversion, or alignment statistics/filtering.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Model Validation for Biomedical and Omics Data
Validates predictive models on omics and biomedical data with nested cross-validation, group/batch/temporal-aware splits, the full data-leakage taxonomy, probability calibration, decision-curve net benefit, optimism correction, sample-size planning, and TRIPOD+AI reporting. Use when estimating mo...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Model Interpretation for Omics Classifiers
Explains ML predictions on omics data with SHAP, LIME, and permutation importance, handling the correlated-feature trap, the conditional-vs-interventional Shapley choice, and the attribution-is-not-causation boundary. Use when interpreting an omics classifier, debugging shortcut/batch learning, o...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Spatial Preprocessing
Quality control, filtering, normalization, and feature selection for spatial transcriptomics data. Calculate QC metrics, filter spots/cells, normalize counts, and identify highly variable genes. Use when filtering and normalizing spatial transcriptomics data.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Clinical Trial Analysis Pipeline
End-to-end clinical trial analysis workflow from CDISC SDTM/ADaM loading through ICH E9(R1) estimand-driven primary analysis to CONSORT 2025 regulatory-compliant reporting. Covers data preparation, FDA 2023 marginal vs conditional logistic regression, categorical tests with Boschloo, modern HTE/s...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Categorical Association Tests for Clinical Data
Tests associations between categorical variables in clinical data using chi-square, Fisher's exact, Boschloo, Cochran-Mantel-Haenszel, and modern McNemar variants with calibrated confidence intervals (Wilson, Newcombe, Miettinen-Nurminen). Use when analyzing categorical outcomes, paired binary en...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
counts_df: rows = sgRNAs, columns = samples
Batch effect correction for CRISPR screens covering ComBat empirical-Bayes, RUV, SVA, control-sgRNA normalization, and the model-based alternative of including batch as a covariate in MAGeCK MLE or Chronos. Covers screen-specific batch sources (passage cohort, library lot, infection day, sequenci...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Analytical Validation and Detection Limits
Treats a ctDNA assay as a molecule-counting experiment at the Poisson edge and builds its analytical-validation case the measurement-science way. Covers the genome-equivalent currency (~330 haploid copies/ng), the lambda = input_GE x VAF sampling ceiling (lambda>=3 for ~95% detection), the error-...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Motif Logo Generator
Generate publication-quality sequence logos for DNA or protein motifs.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Pseudotime Trajectory Visualization
Analyze data with `pseudotime-trajectory-viz` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Survival Analysis (Kaplan-Meier)
Kaplan-Meier survival analysis tool for clinical and biological research. Generates publication-ready survival curves with statistical tests.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Target Novelty Scorer
Score the novelty of biological targets through literature mining and.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Table 1 Generator
Automated generation of baseline characteristics tables (Table 1) for clinical research papers.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Per-CpG Differential Methylation Testing
Tests individual CpG sites for differential methylation (DMC/DMP) from bisulfite sequencing counts or array/continuous beta-value matrices. Covers the count-vs-continuous fork that dictates the model, beta-value vs M-value logit (Du 2010), beta-binomial overdispersion count models (DSS, methylKit...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Protein Quantification -- Reconstructing Protein Abundance from Ions Whose Physical Origin Dictates the Irreducible Erro
Protein quantification from mass spectrometry data including label-free (LFQ, intensity-based), isobaric labeling (TMT, iTRAQ), and metabolic labeling (SILAC) approaches. Use when extracting protein abundances from MS data for differential analysis.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Context-Specific Models
Build tissue and condition-specific metabolic models using GIMME, iMAT, and INIT algorithms with expression data constraints. Create models that reflect cell-type specific metabolism. Use when building tissue-specific metabolic models or integrating transcriptomics with FBA.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Hi-C Pipeline
End-to-end Hi-C analysis workflow from FASTQ to compartments, TADs, and loops, with the decision of WHICH features the sequencing depth can support. Covers pairtools read-pair processing and library QC, cooler matrices, ICE balancing and distance-decay expected, A/B compartments, TAD boundaries, ...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
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