SkillData & Analytics
🦖 Equity Scorer
Compute HEIM diversity and equity metrics from VCF or ancestry data. Generates heterozygosity, FST, PCA plots,
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
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SkillData & Analytics
GTEx Database
Query GTEx (Genotype-Tissue Expression) portal for tissue-specific gene expression, eQTLs (expression quantitative trait loci), and sQTLs. Essential for linking GWAS variants to gene regulation, understanding tissue-specific expression, and interpreting non-coding variant effects.
◈OpenClaw
By FreedomIntelligenceOriginal project
CC-BY-4.0 · FreeView skill
SkillData & Analytics
🔍 GWAS Lookup
Federated variant lookup across 9 genomic databases — GWAS Catalog, Open Targets, PheWeb (UKB, FinnGen, BBJ),
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
🧬 eQTL Catalogue Region Fetch
Fetch a region of cis-eQTL summary statistics from EBI eQTL Catalogue v7+ via tabix-on-FTP. Use when an agent needs eQTL beta / SE / p-value for every variant in a window around a gene's TSS for one specific dataset (study × tissue × quantification method). Input: dataset_id, chromosome, start, e...
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
🧬 nfcore-rnaseq-wrapper
Wrapper skill for running nf-core/rnaseq bulk RNA-seq preprocessing from FASTQ or BAM inputs with strict preflight, reproducibility outputs, and downstream handoff to ClawBio bulk RNA-seq DE skills.
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
nfcore-scrnaseq-wrapper
Wrapper skill for running nf-core/scrnaseq upstream single-cell RNA-seq preprocessing from FASTQ with strict preflight, reproducibility outputs, and downstream handoff to ClawBio scRNA skills.
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
🥚 Proteomics Differential Expression
Differential expression analysis for label-free quantitative (LFQ) intensity data with standard MaxQuant and
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
SCP-CISREG (SciGraph) MCP client
Use when you need to connect to the SciGraph SCP server for CISREG (genomic regulation knowledge graph about enhancers, TADs, genes, proteins, phenotypes) and call its MCP tools (query_cypher, get_kg_statistics, get_entity_details, get_experiment_workflow), including streamableHttp configuration ...
◈OpenClaw
By zjunlpOriginal project
9 GitHub starsMIT · FreeView skill
SkillData & Analytics
SCP-Healx (SciGraph) MCP client
Use when you need to connect to the SciGraph SCP server for Healx (rare disease drug repositioning biomedical knowledge graph by Healx Ltd.) and call its MCP tools (query_cypher, get_kg_statistics, get_entity_details, get_experiment_workflow), including streamableHttp configuration with SCP-HUB-A...
◈OpenClaw
By zjunlpOriginal project
9 GitHub starsMIT · FreeView skill
SkillData & Analytics
SCP-InstructProteinKG (SciGraph) MCP client
Use when you need to connect to the SciGraph SCP server for InstructProteinKG (UniProt/Swiss-Prot derived protein knowledge graph for sequence-text alignment and instruction learning) and call its MCP tools (query_cypher, get_kg_statistics, get_entity_details, get_experiment_workflow), including ...
◈OpenClaw
By zjunlpOriginal project
9 GitHub starsMIT · FreeView skill
SkillData & Analytics
SCP-KG-MTL (SciGraph) MCP client
Use when you need to connect to the SciGraph SCP server for KG-MTL (knowledge graph enhanced multi-task learning framework for molecular interaction prediction: DTI/CPI) and call its MCP tools (query_cypher, get_kg_statistics, get_entity_details, get_experiment_workflow), including streamableHttp...
◈OpenClaw
By zjunlpOriginal project
9 GitHub starsMIT · FreeView skill
SkillData & Analytics
SCP-PPIKG (SciGraph) MCP client
Use when you need to connect to the SciGraph SCP server for PPIKG (BioGRID+UniProt protein–protein interaction knowledge graph for target deconvolution) and call its MCP tools (query_cypher, get_kg_statistics, get_entity_details, get_experiment_workflow), including streamableHttp configuration wi...
◈OpenClaw
By zjunlpOriginal project
9 GitHub starsMIT · FreeView skill
SkillData & Analytics
SIMO Multiomics Integration Agent
AI-powered spatial integration of multi-omics datasets using probabilistic alignment for comprehensive tissue atlas construction and cellular state mapping.
◈OpenClaw
By mdbabumiamssmOriginal project
29 GitHub starsMIT · FreeView skill
SkillData & Analytics
SCP-TransFOL (SciGraph) MCP client
Use when you need to connect to the SciGraph SCP server for TransFOL (multimodal biomedical knowledge graph for drug-drug interaction prediction and complex relational/logical reasoning) and call its MCP tools (query_cypher, get_kg_statistics, get_entity_details, get_experiment_workflow), includi...
◈OpenClaw
By zjunlpOriginal project
9 GitHub starsMIT · FreeView skill
SkillData & Analytics
SCP-TxGNN (SciGraph) MCP client
Use when you need to connect to the SciGraph SCP server for TxGNN (large-scale biomedical knowledge graph for drug repurposing and therapeutic relationship prediction, Neo4j-imported) and call its MCP tools (query_cypher, get_kg_statistics, get_entity_details, get_experiment_workflow), including ...
◈OpenClaw
By zjunlpOriginal project
9 GitHub starsMIT · FreeView skill
SkillData & Analytics
Differential Expression Summary Reporter
Summarise pre-computed differential expression results with ranked gene lists, biological themes, and publication-ready
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
📊 BioQC (FastQC & MultiQC MCP)
Automated sequencing quality control and advanced visualization wrapping FastQC, MultiQC, and custom chart generation. Exposes an MCP stdio server for live AI integration alongside a ClawBio CLI runner.
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
🧬 analyze-fasta
Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython, and write a Markdown report plus structured JSON for downstream chaining.
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
🦖 Bio Orchestrator
Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
Hierarchical Clustering Plot
Use when building a sample-level hierarchical clustering dendrogram from a bulk expression matrix and sample annotation table, especially for QC, batch inspection, or sample similarity assessment. Trigger keywords: hierarchical clustering, dendrogram, sample QC, batch inspection, sample similarit...
✳Claude Code>_Codex◈OpenClaw+1
By aipochOriginal project
1,995 GitHub starsMIT · FreeView skill
SkillData & Analytics
biopython-structure
Use Bio.PDB to parse and analyze protein structures (PDB/mmCIF) for structural bioinformatics tasks; use when you need structure parsing, geometry calculations, or structural comparison/superposition.
◈OpenClaw
By aipochOriginal project
1,995 GitHub starsMIT · FreeView skill
SkillData & Analytics
chembl-database
Query the ChEMBL database for bioactive molecules, targets, bioactivities, and approved drugs; use this when you need to filter by physicochemical properties (e.g., MW, LogP), chemical structure (SMILES), or retrieve drug mechanism information.
◈OpenClaw
By aipochOriginal project
1,995 GitHub starsMIT · FreeView skill
SkillData & Analytics
Proteomics Clock
Compute organ-specific biological age from Olink proteomic data using Goeminne et al. (2025) elastic net aging
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
📊 GWAS Pipeline
End-to-end GWAS automation wrapping PLINK2 for genotype QC and REGENIE for two-step whole-genome regression association
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
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