SkillData & Analytics
🥚 Proteomics Differential Expression
Differential expression analysis for label-free quantitative (LFQ) intensity data with standard MaxQuant and
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
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SkillData & Analytics
SCP-CISREG (SciGraph) MCP client
Use when you need to connect to the SciGraph SCP server for CISREG (genomic regulation knowledge graph about enhancers, TADs, genes, proteins, phenotypes) and call its MCP tools (query_cypher, get_kg_statistics, get_entity_details, get_experiment_workflow), including streamableHttp configuration ...
◈OpenClaw
By zjunlpOriginal project
9 GitHub starsMIT · FreeView skill
SkillData & Analytics
SCP-Healx (SciGraph) MCP client
Use when you need to connect to the SciGraph SCP server for Healx (rare disease drug repositioning biomedical knowledge graph by Healx Ltd.) and call its MCP tools (query_cypher, get_kg_statistics, get_entity_details, get_experiment_workflow), including streamableHttp configuration with SCP-HUB-A...
◈OpenClaw
By zjunlpOriginal project
9 GitHub starsMIT · FreeView skill
SkillData & Analytics
SCP-InstructProteinKG (SciGraph) MCP client
Use when you need to connect to the SciGraph SCP server for InstructProteinKG (UniProt/Swiss-Prot derived protein knowledge graph for sequence-text alignment and instruction learning) and call its MCP tools (query_cypher, get_kg_statistics, get_entity_details, get_experiment_workflow), including ...
◈OpenClaw
By zjunlpOriginal project
9 GitHub starsMIT · FreeView skill
SkillData & Analytics
SCP-KG-MTL (SciGraph) MCP client
Use when you need to connect to the SciGraph SCP server for KG-MTL (knowledge graph enhanced multi-task learning framework for molecular interaction prediction: DTI/CPI) and call its MCP tools (query_cypher, get_kg_statistics, get_entity_details, get_experiment_workflow), including streamableHttp...
◈OpenClaw
By zjunlpOriginal project
9 GitHub starsMIT · FreeView skill
SkillData & Analytics
SCP-PPIKG (SciGraph) MCP client
Use when you need to connect to the SciGraph SCP server for PPIKG (BioGRID+UniProt protein–protein interaction knowledge graph for target deconvolution) and call its MCP tools (query_cypher, get_kg_statistics, get_entity_details, get_experiment_workflow), including streamableHttp configuration wi...
◈OpenClaw
By zjunlpOriginal project
9 GitHub starsMIT · FreeView skill
SkillData & Analytics
SIMO Multiomics Integration Agent
AI-powered spatial integration of multi-omics datasets using probabilistic alignment for comprehensive tissue atlas construction and cellular state mapping.
◈OpenClaw
By mdbabumiamssmOriginal project
29 GitHub starsMIT · FreeView skill
SkillData & Analytics
SCP-TransFOL (SciGraph) MCP client
Use when you need to connect to the SciGraph SCP server for TransFOL (multimodal biomedical knowledge graph for drug-drug interaction prediction and complex relational/logical reasoning) and call its MCP tools (query_cypher, get_kg_statistics, get_entity_details, get_experiment_workflow), includi...
◈OpenClaw
By zjunlpOriginal project
9 GitHub starsMIT · FreeView skill
SkillData & Analytics
SCP-TxGNN (SciGraph) MCP client
Use when you need to connect to the SciGraph SCP server for TxGNN (large-scale biomedical knowledge graph for drug repurposing and therapeutic relationship prediction, Neo4j-imported) and call its MCP tools (query_cypher, get_kg_statistics, get_entity_details, get_experiment_workflow), including ...
◈OpenClaw
By zjunlpOriginal project
9 GitHub starsMIT · FreeView skill
SkillData & Analytics
Differential Expression Summary Reporter
Summarise pre-computed differential expression results with ranked gene lists, biological themes, and publication-ready
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
📊 BioQC (FastQC & MultiQC MCP)
Automated sequencing quality control and advanced visualization wrapping FastQC, MultiQC, and custom chart generation. Exposes an MCP stdio server for live AI integration alongside a ClawBio CLI runner.
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
🧬 analyze-fasta
Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython, and write a Markdown report plus structured JSON for downstream chaining.
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
🦖 Bio Orchestrator
Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
Hierarchical Clustering Plot
Use when building a sample-level hierarchical clustering dendrogram from a bulk expression matrix and sample annotation table, especially for QC, batch inspection, or sample similarity assessment. Trigger keywords: hierarchical clustering, dendrogram, sample QC, batch inspection, sample similarit...
✳Claude Code>_Codex◈OpenClaw+1
By aipochOriginal project
1,995 GitHub starsMIT · FreeView skill
SkillData & Analytics
biopython-structure
Use Bio.PDB to parse and analyze protein structures (PDB/mmCIF) for structural bioinformatics tasks; use when you need structure parsing, geometry calculations, or structural comparison/superposition.
◈OpenClaw
By aipochOriginal project
1,995 GitHub starsMIT · FreeView skill
SkillData & Analytics
chembl-database
Query the ChEMBL database for bioactive molecules, targets, bioactivities, and approved drugs; use this when you need to filter by physicochemical properties (e.g., MW, LogP), chemical structure (SMILES), or retrieve drug mechanism information.
◈OpenClaw
By aipochOriginal project
1,995 GitHub starsMIT · FreeView skill
SkillData & Analytics
Proteomics Clock
Compute organ-specific biological age from Olink proteomic data using Goeminne et al. (2025) elastic net aging
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
📊 GWAS Pipeline
End-to-end GWAS automation wrapping PLINK2 for genotype QC and REGENIE for two-step whole-genome regression association
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
🧬 Genome Comparator
Compare your genome to George Church (PGP-1) and estimate ancestry composition via IBS and EM admixture
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
Sample QC Triage
Deterministic multi-sample QC triage for identity, sex, contamination, and batch-shift outliers
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
Pathway Enrichment
Run pathway and gene-set enrichment analysis on gene lists or ranked gene data, then interpret the results. Use whenever the user has a set of genes (differentially expressed genes from PyDESeq2/Scanpy, CRISPR-screen hits, cluster marker genes, proteomics hits) and wants to know which biological ...
✳Claude Code>_Codex◈OpenClaw+1
By K-Dense-AIOriginal project
MIT · FreeView skill
SkillData & Analytics
Bulk RNA-seq
End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon, featureCounts), assembles a gene-level counts matrix, then hands off to differential expression (pydeseq2), pathway/GSEA enrichment (pathwa...
✳Claude Code>_Codex◈OpenClaw+1
By K-Dense-AIOriginal project
MIT · FreeView skill
SkillData & Analytics
🧪 UKB-PPP Region Fetch
Fetch a regional slice of plasma pQTL summary statistics from the UK Biobank Pharma Proteomics Project (UKB-PPP; Sun 2023 Nature) for a specific (protein, ancestry) measurement. Use when an agent needs per-variant beta / SE / p-value around a coloc-lead variant for downstream colocalisation, Mend...
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
Divergence Time Estimation -- A Date Is Mostly the Calibration Prior, Not the Sequence
Estimate divergence times under molecular-clock models with BEAST2, MCMCTree/PAML, TreePL, and LSD2, framing a date as a product of the calibration prior and the clock model far more than of the sequence data. Covers why branch length = rate x time is nonidentifiable so only calibrations convert ...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
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