DeepVariant Caller Skill
DeepVariant deep learning variant calling skill for high-accuracy SNV and indel detection
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DeepVariant deep learning variant calling skill for high-accuracy SNV and indel detection
BLAST skill for sequence similarity searching, homology detection, and database querying
Gene fusion detection skill for oncology applications with multiple caller integration
Graph-RAG Solver
Map spatial transcriptomics data from 10x Genomics Visium/Xenium onto.
Work with sparse matrices for memory-efficient storage of count data. Use when dealing with single-cell data or large bulk RNA-seq datasets where most values are zero.
Build digital twin patient models to test drug efficacy and toxicity
BED file format fundamentals, creation, validation, and basic operations. Covers BED3 through BED12 formats, coordinate systems, sorting, and format conversion using bedtools and pybedtools. Use when working with genomic coordinates or preparing interval files for downstream tools.
Beautify meta-analysis forest plots with customizable odds ratio points
Professional beautification tool for gene expression heatmaps, automatically adds clustering trees, color annotation tracks, and intelligently optimizes label layout.
Auto-annotate cell clusters from single-cell RNA data using marker genes.
Design multi-omics integration strategies for transcriptomics, proteomics,
Analyze metabolite-mediated cell-cell communication using MeboCost for metabolic signaling inference between cell types. Predict metabolite secretion and sensing patterns from scRNA-seq data. Use when studying metabolic crosstalk between cell populations or metabolite-receptor interactions.
Quick-reference sheet for OmicVerse tutorials spanning MOFA, GLUE pairing, SIMBA integration, TOSICA transfer, and StaVIA cartography.
Search and retrieve literature from PubMed using NCBI's EDirect command-line tools.
Compare Hi-C contact matrices between conditions to identify differential chromatin interactions. Compute log2 fold changes, statistical significance, and visualize differential contact maps. Use when comparing Hi-C contacts between conditions.
Generates semantic layer definitions for BI tools from dimensional models
Structural Homology & Evolution Analysis - Analyze protein evolution: get gene tree from Ensembl, find homologs, compare sequences, and predict structure. Use this skill for evolutionary biology tasks involving get homology symbol get genetree member symbol calculate protein sequence properties p...
Generates a DAX calculated column that sums a target value column for unique combinations of specified grouping columns, effectively ignoring other columns in the filter context.
Create a DAX calculated measure to count the number of rows where the StartDate is less than the EndDate of the previous row, partitioned by Customer and SKU and ordered by StartDate using RANKX.
🧠 The right skill, one API call. AI agent skills registry with token-efficient skill resolution. 5,000+ skills from 500+ top repos.
🧠 The right skill, one API call. AI agent skills registry with token-efficient skill resolution. 5,000+ skills from 500+ top repos.
- `alphafold-database` - Protein structure prediction
An MCP server that provides on-demand skill loading for AI coding assistants.
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