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Structures data quality assessment with completeness, accuracy, and consistency validation. Use when auditing clinical data, assessing data quality, or validating data integrity.
Render a 4-panel regional LocusCompare diagnostic for one (lead variant, exposure study, outcome study) tuple - overlays GWAS Manhattan, QTL Manhattan, GENCODE gene track, and cross-trait scatter colored by LD r². Use when an agent needs visual confirmation that two GWAS / QTL signals share the s...
Detects aberrant splicing in single rare-disease patients vs a control panel using FRASER 2.0 (Bioconductor; Beta-binomial autoencoder on Intron Jaccard Index, default delta cutoff 0.1, q hyperparameter), OUTRIDER (gene-level outlier expression via autoencoder denoising), LeafcutterMD (Dirichlet-...
Identifies super-enhancers from H3K27ac, MED1, or BRD4 ChIP-seq using ROSE, ROSE2, LILY, HOMER -style super, and ENCODE dELS cross-referencing. Handles peak stitching parameters, ranking choices, hockey-stick inflection, marker choice (H3K27ac vs MED1/BRD4), and cross-condition comparison with sp...
Infers person-to-person transmission from pathogen genomes using outbreaker2 (Campbell 2018), TransPhylo (Didelot 2017), phybreak (Klinkenberg 2017), BadTrIP (De Maio 2018), SCOTTI (De Maio 2016), BEASTLIER (Hall 2015), and SNP-distance / cluster-picker approaches (HIV-TRACE for HIV; transcluster...
Retrieve records from NCBI databases using Biopython Bio.Entrez (EFetch, ESummary). Use when downloading sequences, fetching GenBank/GenPept records, getting document summaries, parsing nested XML, navigating GI deprecation, choosing between rettype+retmode combinations, and parsing into Biopytho...
Create your first Speak AI tutoring session with pronunciation feedback.
Execute Speak primary workflow: AI Conversation Practice with real-time
Execute Speak secondary workflow: Pronunciation Training with phoneme-level
Write a structured clinical case summary or case presentation. Use when asked to write a clinical case summary, case presentation, patient case report, or clinical handover. Produces a structured summary using SBAR or SOAP format. For educational and documentation purposes only — not a substitute...
Guide for writing formal academic papers following IEEE and ACM standards
tutorial-engineer workflow skill. Use this skill when the user needs Creates step-by-step tutorials and educational content from code. Transforms complex concepts into progressive learning experiences with hands-on examples and the operator should preserve the upstream workflow, copied support fi...
This skill should be used when the user asks to "review paper quality", "check paper completeness", "validate paper structure", "self-review before submission", "audit claims", "check overclaiming", "verify whether results support claims", or mentions systematic paper quality checking. Provides c...
Automated end-to-end UI testing and verification on an Android Emulator using ADB.
Produce a complete mobile app architecture design — platform choice, navigation structure, state management, data layer, key screens. Use when asked to "build a mobile app", "new app", "create iOS/Android app", "app architecture", or "cross-platform app".
Execute mobile app testing on iOS and Android devices/simulators.
Build 3D and AR apps on Apple platforms (iOS, macOS, visionOS) with SceneViewSwift — the SwiftUI wrapper around RealityKit. Use whenever the user asks for "3D in SwiftUI", "AR with ARKit in SwiftUI", a model viewer for iOS, or any Apple-platform 3D/AR app where the dependency is the `SceneViewSwi...
Set up bundle IDs, capabilities, signing certificates, provisioning profiles, and encrypted signing sync with the asc cli. Use when onboarding a new app, rotating signing assets, or sharing them across a team.
Compose Multiplatform Desktop patterns for the `desktopApp/` module. Use when working with (1) Desktop-only APIs (Window, WindowState, Tray, MenuBar, Dialog), (2) keyboard shortcuts and menu systems with OS-aware conventions (Cmd vs Ctrl, isMacOS branching), (3) desktop navigation (NavigationRail...
Mobile specialist for Flutter, React Native, and Swift native iOS development. Use for mobile app, Flutter, Dart, React Native, Swift, SwiftUI, iOS, Android, Riverpod, swift-openapi-generator, and widget work.
React Native and Expo development guide covering components, styling, animations, navigation, state management, forms, networking, performance optimization, testing, native capabilities, and engineering (project structure, deployment, SDK upgrades, CI/CD). Use when: building React Native or Expo ...
Flutter cross-platform development guide covering widget patterns, Riverpod/Bloc state management, GoRouter navigation, performance optimization, and platform-specific implementations. Includes const optimization, responsive layouts, testing strategies, and DevTools profiling. Use when: building ...
Every Apple framework, indexed locally, with deprecation analysis and an MCP server no other Apple-docs tool has. Trigger phrases: `look up an Apple API`, `what's deprecated in iOS`, `find a SwiftUI symbol`, `port this from UIKit to SwiftUI`, `what changed at WWDC`, `use apple-docs`, `run apple-d...
Add secure storage to .NET MAUI apps using SecureStorage.Default. Covers SetAsync, GetAsync, Remove, RemoveAll, platform setup (Android backup rules, iOS Keychain entitlements, Windows limits), common pitfalls, and a DI wrapper service for testability. USE FOR: "secure storage", "SecureStorage", ...
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