SkillData & Analytics
🦖 Lit Synthesizer
Search PubMed and bioRxiv for bioinformatics literature, synthesise results into a structured report, and build
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
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SkillData & Analytics
🦖 scRNA Orchestrator
Local Scanpy pipeline for single-cell RNA-seq QC, optional doublet detection, clustering, marker discovery, optional
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
🏥 UKB Navigator
Semantic search across UK Biobank's 12,000+ data fields and publications — find the right variables for your
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
🧬 Variant Annotation
Annotate VCF variants with Ensembl VEP REST, ClinVar significance, gnomAD/population frequency context, and prioritized
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
🧬 VCF Annotator
Annotate VCF variants with Ensembl VEP, ClinVar, and gnomAD. Ranks variants by impact (HIGH/MODERATE/LOW/MODIFIER) and generates a reproducible report.
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
🎯 Target Validation Scorer
Evidence-grounded target validation scoring with GO/NO-GO decisions for drug discovery campaigns
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
🧬 nfcore-rnaseq-wrapper
Wrapper skill for running nf-core/rnaseq bulk RNA-seq preprocessing from FASTQ or BAM inputs with strict preflight, reproducibility outputs, and downstream handoff to ClawBio bulk RNA-seq DE skills.
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
nfcore-scrnaseq-wrapper
Wrapper skill for running nf-core/scrnaseq upstream single-cell RNA-seq preprocessing from FASTQ with strict preflight, reproducibility outputs, and downstream handoff to ClawBio scRNA skills.
✳Claude Code>_Codex◈OpenClaw+1
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
R Survival Analysis with Cox Model and Double Brackets
Generate R code to predict additional survival time using Cox proportional hazards regression, ensuring all data frame column access uses double brackets [[]] instead of $.
✳Claude Code>_Codex↗Cursor+1
By ECNU-ICALKOriginal project
609 GitHub starsMIT · FreeView skill
SkillData & Analytics
estimate_survival_time_conditional_weighted_r
Estimate additional survival time for alive patients in oncology clinical trials using a Cox Proportional Hazards model and a weighted average of conditional survival probabilities. Includes data simulation and step-by-step statistical explanation.
✳Claude Code>_Codex◈OpenClaw+1
By ECNU-ICALKOriginal project
609 GitHub starsMIT · FreeView skill
SkillData & Analytics
Bioinformatics Skills Gateway
Gateway to 400+ bioinformatics skills from bioSkills and ClawBio. Covers genomics, transcriptomics, single-cell, variant calling, pharmacogenomics, metagenomics, structural biology, and more. Fetches domain-specific reference material on demand.
✳Claude Code>_Codex◈OpenClaw+1
By NousResearchOriginal project
185,036 GitHub starsMIT · FreeView skill
SkillData & Analytics
ATAC Seq
ATAC-seq processing with assay QC, MACS3 peak calling, consensus peak matrices, differential accessibility, and motif or footprint follow-up.
✳Claude Code>_Codex◈OpenClaw+1
By Runchuan-BUOriginal project
MIT · FreeView skill
SkillData & Analytics
bio-metric-system
**Step 4: Metric system design (评价指标体系构建)**
◈OpenClaw
By Runchuan-BUOriginal project
MIT · FreeView skill
SkillData & Analytics
Cell Annotation
Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.
◈OpenClaw
By Runchuan-BUOriginal project
MIT · FreeView skill
SkillData & Analytics
Differential Expression
Bulk transcriptomics differential expression with count-aware modeling, design validation, contrast handling, thresholded exports, and publication-ready DE figures.
✳Claude Code>_Codex◈OpenClaw+1
By Runchuan-BUOriginal project
MIT · FreeView skill
SkillData & Analytics
Metagenomics
Shotgun metagenomics workflow with host-depletion-aware QC, taxonomic profiling, functional profiling, AMR follow-up, and reproducible community output tables.
✳Claude Code>_Codex◈OpenClaw+1
By Runchuan-BUOriginal project
MIT · FreeView skill
SkillData & Analytics
Proteomics
Mass spectrometry proteomics QC, quantification, comparative analysis, and export for DDA, DIA, and protein-level result tables.
✳Claude Code>_Codex◈OpenClaw+1
By Runchuan-BUOriginal project
MIT · FreeView skill
SkillData & Analytics
Ensembl REST API Query
Query Ensembl for genomic data. Use when user asks about gene coordinates, genomic sequences, variants, gene structure, exons, transcripts, or species comparison. Triggers on "ensembl", "gene coordinates", "genomic location", "exon", "transcript", "variant location", "rsid", "rs number".
✳Claude Code>_Codex◈OpenClaw+1
By Runchuan-BUOriginal project
MIT · FreeView skill
SkillData & Analytics
KEGG Pathway Database Query
Query KEGG for biological pathways and gene info. Use when user asks about metabolic pathways, signaling pathways, pathway genes, or KEGG IDs. Triggers on "kegg", "pathway", "metabolic pathway", "signaling pathway", "pathway genes".
✳Claude Code>_Codex↗Cursor+1
By Runchuan-BUOriginal project
MIT · FreeView skill
SkillData & Analytics
NCBI GEO Database Query
Query NCBI GEO for gene expression datasets. Use when user asks about RNA-seq datasets, microarray data, expression data, GEO accessions, or finding public datasets. Triggers on "geo", "gene expression omnibus", "expression dataset", "RNA-seq dataset", "microarray dataset", "GSE", "GDS".
✳Claude Code>_Codex◈OpenClaw+1
By Runchuan-BUOriginal project
MIT · FreeView skill
SkillData & Analytics
STRING Protein Interaction Database
Query STRING for protein-protein interactions. Use when user asks about protein interactions, interaction networks, binding partners, or interactome. Triggers on "string", "protein interaction", "interaction network", "binding partners", "interactome", "PPI".
◈OpenClaw
By Runchuan-BUOriginal project
MIT · FreeView skill
SkillData & Analytics
Biomarker Discovery Pipeline
Biomarker Discovery Pipeline - Discover biomarkers: TCGA differential expression, NCBI gene data, OpenTargets associations, and clinical relevance. Use this skill for precision medicine tasks involving tcga differential expression analysis get gene metadata by gene name get associated targets by ...
◈OpenClaw
By SpectrAI-InitiativeOriginal project
380 GitHub starsMIT · FreeView skill
SkillData & Analytics
DESeq2 Differential Expression Skill
DESeq2 differential expression analysis skill with normalization, statistical modeling, and visualization
✳Claude Code>_Codex◈OpenClaw+1
By a5c-aiOriginal project
1,874 GitHub starsMIT · FreeView skill
SkillData & Analytics
Pysam
Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.
✳Claude Code>_Codex◈OpenClaw+1
By henriquescastilhoOriginal project
1 GitHub starsMIT · FreeView skill
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