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Fragpipe

SkillData & Analytics

MaxQuant + Perseus — Proteomics Analysis Pipeline

MaxQuant + Perseus proteomics pipeline: run MaxQuant for LFQ and SILAC; parse proteinGroups.txt in Python; filter contaminants/decoys; log2 + median-normalize; impute MNAR; t-test with FDR; volcano plot; GO/pathway enrichment. Use Proteome Discoverer for Thermo-native processing; FragPipe/MSFragg...

◈OpenClaw

Business Intelligence Analyst Clinical Research

By jaechang-hitsOriginal project

CC-BY-4.0 · FreeView skill

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AI prompts andagent skills.

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MaxQuant + Perseus — Proteomics Analysis Pipeline

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AI prompts and
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