SkillData & Analytics
Microbiome Diversity Reporter
Interpret Alpha and Beta diversity metrics from 16S rRNA sequencing results.
✳Claude Code>_Codex◈OpenClaw+1
By aipochOriginal project
MIT · FreeView skill
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SkillData & Analytics
MOOC Analytics Guide
Analyzing MOOC data, learning analytics, and online education metrics
◈OpenClaw
By wentoraiOriginal project
MIT · FreeView skill
SkillEducation & Research
Immunogenicity Scoring
Rank and prioritize neoantigen/epitope candidates by likely T-cell response using NeoFox feature annotation, PRIME2.0, BigMHC-IM, the Łuksza/Balachandran fitness model (agretopicity + foreignness), and pVACtools tiering. Encodes the field's hard truths that immunogenicity is the least-solved laye...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillHealthcare & Life Sciences
🏥 Clinical Variant Reporter
Classify germline variants from VCF/BCF files according to the ACMG/AMP 2015 28-criteria evidence framework and
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
Pharmacogenomics; Star Alleles, Activity Scores, and CPIC/DPWG Guidance
Queries PharmGKB / CPIC / DPWG for drug-gene interactions; calls CYP2D6/CYP2C9/CYP2C19/DPYD/TPMT/NUDT15/UGT1A1/SLCO1B1 star alleles and phenotype with PharmCAT, Cyrius (CYP2D6 structural variants), Aldy, Stargazer; applies Caudle 2020 activity-score translation. Use when implementing pharmacogeno...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Funnel Analyzer
Analyze conversion funnels and identify drop-offs. Use when: analyzing checkout funnel; tracking signup flow; identifying conversion blockers; optimizing user journey; visualizing funnel performance
◈OpenClaw
By guia-matthieuOriginal project
MIT · FreeView skill
SkillData & Analytics
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Differential gene expression analysis for bulk RNA-seq count matrices using a DESeq2-like workflow in Python; use when you need Wald tests, FDR correction, and optional LFC shrinkage for condition/batch/covariate designs.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
arboreto
Infer gene regulatory networks (GRNs) from gene expression matrices using GRNBoost2 or GENIE3; use when analyzing bulk or single-cell RNA-seq to identify TF→target regulatory relationships.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
GWAS Catalog Database
Query the NHGRI-EBI GWAS Catalog to retrieve SNP–trait associations, study metadata, and (when available) summary statistics when you need evidence for a variant, trait/disease, gene, or genomic region.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
string-database
Access the STRING database to map identifiers, retrieve protein–protein interaction networks, and run functional/PPI enrichment when you need interaction context for a gene/protein set.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Metagenomic Krona Chart
Analyze data with `metagenomic-krona-chart` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Model Interpretation for Omics Classifiers
Explains ML predictions on omics data with SHAP, LIME, and permutation importance, handling the correlated-feature trap, the conditional-vs-interventional Shapley choice, and the attribution-is-not-causation boundary. Use when interpreting an omics classifier, debugging shortcut/batch learning, o...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Predictive Survival Modeling
Builds and validates predictive time-to-event models on clinical and omics data with penalized Cox, random survival forests, gradient-boosted and deep survival models, and prediction-grade evaluation (Uno's C, time-dependent AUC, integrated Brier, calibration, competing risks). Use when building ...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Proteomics Quality Control -- A Three-Level Funnel Where the Matrix Sees the Failure Last
Quality control and assessment for proteomics data. Use when evaluating proteomics data quality before downstream analysis. Covers sample metrics, missing value patterns, replicate correlation, batch effects, and intensity distributions.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Repertoire Visualization
Create publication-quality visualizations of immune repertoire data including circos plots, clone tracking, diversity plots, and network graphs. Use when generating figures for repertoire comparisons, clonal dynamics, or V(D)J gene usage.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Clinical Trial Analysis Pipeline
End-to-end clinical trial analysis workflow from CDISC SDTM/ADaM loading through ICH E9(R1) estimand-driven primary analysis to CONSORT 2025 regulatory-compliant reporting. Covers data preparation, FDA 2023 marginal vs conditional logistic regression, categorical tests with Boschloo, modern HTE/s...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Categorical Association Tests for Clinical Data
Tests associations between categorical variables in clinical data using chi-square, Fisher's exact, Boschloo, Cochran-Mantel-Haenszel, and modern McNemar variants with calibrated confidence intervals (Wilson, Newcombe, Miettinen-Nurminen). Use when analyzing categorical outcomes, paired binary en...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
counts_df: rows = sgRNAs, columns = samples
Batch effect correction for CRISPR screens covering ComBat empirical-Bayes, RUV, SVA, control-sgRNA normalization, and the model-based alternative of including batch as a covariate in MAGeCK MLE or Chronos. Covers screen-specific batch sources (passage cohort, library lot, infection day, sequenci...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Motif Logo Generator
Generate publication-quality sequence logos for DNA or protein motifs.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Pseudotime Trajectory Visualization
Analyze data with `pseudotime-trajectory-viz` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Survival Analysis (Kaplan-Meier)
Kaplan-Meier survival analysis tool for clinical and biological research. Generates publication-ready survival curves with statistical tests.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Target Novelty Scorer
Score the novelty of biological targets through literature mining and.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Table 1 Generator
Automated generation of baseline characteristics tables (Table 1) for clinical research papers.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Per-CpG Differential Methylation Testing
Tests individual CpG sites for differential methylation (DMC/DMP) from bisulfite sequencing counts or array/continuous beta-value matrices. Covers the count-vs-continuous fork that dictates the model, beta-value vs M-value logit (Du 2010), beta-binomial overdispersion count models (DSS, methylKit...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
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