SkillDesign
Motion Pipeline Skill
CPU-only motion data processing pipeline for game animation: BVH import, contact detection, root decomposition, motion blending, FABRIK IK. No GPU required.
◈OpenClaw
By notqueOriginal project
MIT · FreeView skill
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Prompts and skills25 resources
SkillData & Analytics
Microbiome Diversity Reporter
Interpret Alpha and Beta diversity metrics from 16S rRNA sequencing results.
✳Claude Code>_Codex◈OpenClaw+1
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
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Differential gene expression analysis for bulk RNA-seq count matrices using a DESeq2-like workflow in Python; use when you need Wald tests, FDR correction, and optional LFC shrinkage for condition/batch/covariate designs.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
arboreto
Infer gene regulatory networks (GRNs) from gene expression matrices using GRNBoost2 or GENIE3; use when analyzing bulk or single-cell RNA-seq to identify TF→target regulatory relationships.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Clinical Trial Analysis Pipeline
End-to-end clinical trial analysis workflow from CDISC SDTM/ADaM loading through ICH E9(R1) estimand-driven primary analysis to CONSORT 2025 regulatory-compliant reporting. Covers data preparation, FDA 2023 marginal vs conditional logistic regression, categorical tests with Boschloo, modern HTE/s...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Categorical Association Tests for Clinical Data
Tests associations between categorical variables in clinical data using chi-square, Fisher's exact, Boschloo, Cochran-Mantel-Haenszel, and modern McNemar variants with calibrated confidence intervals (Wilson, Newcombe, Miettinen-Nurminen). Use when analyzing categorical outcomes, paired binary en...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
counts_df: rows = sgRNAs, columns = samples
Batch effect correction for CRISPR screens covering ComBat empirical-Bayes, RUV, SVA, control-sgRNA normalization, and the model-based alternative of including batch as a covariate in MAGeCK MLE or Chronos. Covers screen-specific batch sources (passage cohort, library lot, infection day, sequenci...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Analytical Validation and Detection Limits
Treats a ctDNA assay as a molecule-counting experiment at the Poisson edge and builds its analytical-validation case the measurement-science way. Covers the genome-equivalent currency (~330 haploid copies/ng), the lambda = input_GE x VAF sampling ceiling (lambda>=3 for ~95% detection), the error-...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Survival Analysis (Kaplan-Meier)
Kaplan-Meier survival analysis tool for clinical and biological research. Generates publication-ready survival curves with statistical tests.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Table 1 Generator
Automated generation of baseline characteristics tables (Table 1) for clinical research papers.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Per-CpG Differential Methylation Testing
Tests individual CpG sites for differential methylation (DMC/DMP) from bisulfite sequencing counts or array/continuous beta-value matrices. Covers the count-vs-continuous fork that dictates the model, beta-value vs M-value logit (Du 2010), beta-binomial overdispersion count models (DSS, methylKit...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Manhattan, QQ, and Locuszoom Plots
Build Manhattan, Miami, QQ, and locuszoom-style regional plots from GWAS, TWAS, PWAS, and QTL summary statistics with correct genomic-inflation diagnostics, multi-trait overlays, lead-SNP labeling, and LD-aware regional rendering. Use when visualizing association results across the genome, compar...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Association Testing
Single-variant common-variant GWAS with plink2 --glm (linear/logistic, Firth) and the linear mixed models GEMMA, BOLT-LMM, SAIGE, regenie (SPA). A GWAS statistic is valid only when genotype is independent of unmodeled phenotype drivers after the chosen covariates and random effects, so the engine...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Subgroup Analysis and Heterogeneous Treatment Effects
Performs subgroup and heterogeneous treatment effect (HTE) analyses for clinical trials. Covers Mantel-Haenszel pooling, Breslow-Day, interaction tests in regression, RERI for additive interaction, modern data-adaptive HTE methods (STEPP, SIDES, causal forests, X/R-learners), Bayesian shrinkage (...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Count Matrix QC
Quality control and exploration of RNA-seq count matrices before differential expression. Check for outliers, batch effects, and sample relationships. Use when assessing count matrix quality before DE analysis.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
🧬 Mendelian Randomisation
Two-sample Mendelian Randomisation from GWAS summary statistics with IVW, MR-Egger, weighted median/mode, and
◈OpenClaw
By BioTender-maxPackage repository
MIT · FreeView skill
SkillData & Analytics
Two-sample t-test
Medical biostatistics hypothesis testing toolkit: t-tests, ANOVA, chi-square, Fisher exact, Mann-Whitney, Kruskal-Wallis, sample size calculation, power analysis, multiple testing correction, survival analysis, and clinical trial biostatistics.
✳Claude Code>_Codex◈OpenClaw+1
By mkurmanOriginal project
MIT · FreeView skill
SkillData & Analytics
NaN-Safe Correlation Computation
Per-feature NaN-safe Spearman/Pearson correlation across many features (genes, proteins, variants) with missing values. Covers why bulk matrix shortcuts fail, correct pairwise deletion, degenerate input filtering, and large-dataset performance. Use statistical-analysis for test choice; shap-model...
✳Claude Code>_Codex◈OpenClaw+3
By BioTender-maxPackage repository
CC-BY-4.0 · FreeView skill
SkillData & Analytics
PyDESeq2 Differential Expression Analysis
Bulk RNA-seq DE with PyDESeq2: load counts, normalize, fit negative binomial models, Wald test (BH-FDR), LFC shrinkage, volcano/MA plots. Use for two-group comparisons, multi-factor designs with batch correction, multiple contrasts.
✳Claude Code>_Codex◈OpenClaw+1
By BioTender-maxPackage repository
CC-BY-4.0 · FreeView skill
SkillData & Analytics
🥚 Proteomics Differential Expression
Differential expression analysis for label-free quantitative (LFQ) intensity data with standard MaxQuant and
◈OpenClaw
By BioTender-maxPackage repository
MIT · FreeView skill
SkillData & Analytics
Power and Sample Size for Clinical Trials
Computes sample size and power for clinical trials including continuous, binary, and time-to-event endpoints; superiority, non-inferiority, and equivalence designs; FDA 2016 non-inferiority margin selection with M1/M2 framework; Schoenfeld 1981 and Lakatos 1988 for survival; Schuirmann TOST and 8...
✳Claude Code>_Codex◈OpenClaw+1
By FridrichMethodPackage repository
MIT · FreeView skill
SkillData & Analytics
Batch Correction
Batch effect correction for CRISPR screens. Covers normalization across batches, technical replicate handling, and batch-aware analysis. Use when combining screens from multiple batches or correcting systematic technical variation.
✳Claude Code>_Codex◈OpenClaw+1
By David-Li0406Original project
Apache-2.0 · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
Work with sparse matrices for memory-efficient storage of count data. Use when dealing with single-cell data or large bulk RNA-seq datasets where most values are zero.
✳Claude Code>_Codex◈OpenClaw+1
By FridrichMethodPackage repository
MIT · FreeView skill
SkillData & Analytics
Heatmap Beautifier
Professional beautification tool for gene expression heatmaps, automatically adds clustering trees, color annotation tracks, and intelligently optimizes label layout.
◈OpenClaw
By GeorgeDoors888Original project
MIT · FreeView skill
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