SkillData & Analytics
Microbiome Diversity Reporter
Interpret Alpha and Beta diversity metrics from 16S rRNA sequencing results.
✳Claude Code>_Codex◈OpenClaw+1
By aipochOriginal project
MIT · FreeView skill
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SkillData & Analytics
Real Estate Data Analysis with Random Forest and Visualization
Performs regression and classification analysis on housing data using Random Forest models, including data merging, preprocessing, and generating specific evaluation metrics and visualizations.
✳Claude Code>_Codex◈OpenClaw+1
By ECNU-ICALKOriginal project
MIT · FreeView skill
SkillData & Analytics
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Differential gene expression analysis for bulk RNA-seq count matrices using a DESeq2-like workflow in Python; use when you need Wald tests, FDR correction, and optional LFC shrinkage for condition/batch/covariate designs.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Proteomics Quality Control -- A Three-Level Funnel Where the Matrix Sees the Failure Last
Quality control and assessment for proteomics data. Use when evaluating proteomics data quality before downstream analysis. Covers sample metrics, missing value patterns, replicate correlation, batch effects, and intensity distributions.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Repertoire Visualization
Create publication-quality visualizations of immune repertoire data including circos plots, clone tracking, diversity plots, and network graphs. Use when generating figures for repertoire comparisons, clonal dynamics, or V(D)J gene usage.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
matplotlib Fundamentals
Build publication-quality figures with matplotlib using the object-oriented Figure/Axes API, constrained_layout, rcParams customization, TrueType (Type-42) font embedding for journal submission, and CVD-safe palettes. Covers seaborn integration, common chart types, axis formatting, and the small ...
✳Claude Code>_Codex◈OpenClaw+2
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Pseudotime Trajectory Visualization
Analyze data with `pseudotime-trajectory-viz` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Survival Analysis (Kaplan-Meier)
Kaplan-Meier survival analysis tool for clinical and biological research. Generates publication-ready survival curves with statistical tests.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Heatmaps and Hierarchical Clustering
Build clustered heatmaps for expression matrices and other features-by-samples data with rigorous distance/linkage/scaling choices, robust color mapping, optimal leaf ordering, and ComplexHeatmap/pheatmap/seaborn rendering. Covers the ward.D vs ward.D2 trap, the row-vs-column scaling decision, mu...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Metabolic Modeling Pipeline
End-to-end genome-scale metabolic modeling from genome sequence to flux predictions. Covers automated reconstruction with CarveMe, model validation with memote, FBA/FVA analysis, and gene essentiality prediction. Use when building metabolic models or predicting metabolic phenotypes from genomic d...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Count Matrix QC
Quality control and exploration of RNA-seq count matrices before differential expression. Check for outliers, batch effects, and sample relationships. Use when assessing count matrix quality before DE analysis.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
MIT · FreeView skill
SkillData & Analytics
Statistical Significance Annotation on Plots
Guide for annotating statistical significance (p-value asterisks) on comparison plots. Covers standard notation (ns, *, **, ***, ****), matplotlib bracket+asterisk implementation, and use with seaborn box/violin/bar plots. Use when preparing publication-ready figures with significance markers.
✳Claude Code>_Codex↗Cursor+1
By jaechang-hitsOriginal project
CC-BY-4.0 · FreeView skill
SkillData & Analytics
HOMER — Motif Analysis and Peak Annotation
De novo and known TF motif enrichment in ChIP-seq/ATAC-seq peaks via HOMER. findMotifsGenome.pl finds over-represented patterns vs background; annotatePeaks.pl assigns context (TSS distance, gene, repeat). Use after MACS3 to identify enriched TFs, annotate peaks with nearest genes, and validate C...
◈OpenClaw
By jaechang-hitsOriginal project
CC-BY-4.0 · FreeView skill
SkillData & Analytics
PyDESeq2 Differential Expression Analysis
Bulk RNA-seq DE with PyDESeq2: load counts, normalize, fit negative binomial models, Wald test (BH-FDR), LFC shrinkage, volcano/MA plots. Use for two-group comparisons, multi-factor designs with batch correction, multiple contrasts.
✳Claude Code>_Codex◈OpenClaw+1
By jaechang-hitsOriginal project
CC-BY-4.0 · FreeView skill
SkillData & Analytics
🥚 Proteomics Differential Expression
Differential expression analysis for label-free quantitative (LFQ) intensity data with standard MaxQuant and
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
📊 BioQC (FastQC & MultiQC MCP)
Automated sequencing quality control and advanced visualization wrapping FastQC, MultiQC, and custom chart generation. Exposes an MCP stdio server for live AI integration alongside a ClawBio CLI runner.
◈OpenClaw
By ClawBioOriginal project
MIT · FreeView skill
SkillData & Analytics
Generate Cell Analysis Charts
Domain-specialized chart generator for cell biology video analysis outputs. Consumes structured JSON from analyze_lab_video_cell_behavior or compatible sources and produces publication-ready figures — growth curves, cell trajectory maps, phenotype distribution charts, MSD plots, wound-closure tim...
◈OpenClaw
By wu-ycOriginal project
MIT · FreeView skill
SkillData & Analytics
Neoantigen Predictor
Predict neoantigens that may be recognized by the immune system based.
◈OpenClaw
By aipochOriginal project
MIT · FreeView skill
SkillData & Analytics
Heatmap Beautifier
Professional beautification tool for gene expression heatmaps, automatically adds clustering trees, color annotation tracks, and intelligently optimizes label layout.
◈OpenClaw
By GeorgeDoors888Original project
MIT · FreeView skill
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