SkillData & Analytics
Clarity Variant Skill
An MCP server that provides on-demand skill loading for AI coding assistants.
◈OpenClaw
By modbenderOriginal project
17 GitHub starsMIT · FreeView skill
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SkillData & Analytics
Nicheformer Spatial Agent
---name: nicheformer-spatial-agent description: Foundation model-powered spatial transcriptomics analysis leveraging 53M+ spatially resolved cells for cellular architecture modeling and tissue niche discovery. license: MIT metadata: author: AI Group version: "1.0.0" created: "2026-01-20" compatib...
◈OpenClaw
By mdbabumiamssmOriginal project
29 GitHub starsMIT · FreeView skill
SkillData & Analytics
PRS-Net Deep Learning Agent
---name: prs-net-deep-learning-agent description: Geometric deep learning-based polygenic risk score prediction using PRS-Net for modeling gene interactions, enhanced disease prediction, and cross-ancestry portability. license: MIT metadata: author: AI Group version: "1.0.0" created: "2026-01-20"...
◈OpenClaw
By mdbabumiamssmOriginal project
29 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
Compute evolutionary distances and build phylogenetic trees using Biopython Bio.Phylo.TreeConstruction. Use when creating distance matrices from alignments, building NJ/UPGMA trees, or generating bootstrap consensus trees.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
Detect signatures of natural selection using Fst, Tajima's D, iHS, XP-EHH, and other selection statistics. Calculate population differentiation, test for departures from neutrality, and identify selective sweeps with scikit-allel and vcftools. Use when computing selection signatures like Fst or T...
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
Generates standardized quality control reports by aggregating metrics from FastQC, alignment, and other tools using MultiQC. Use when summarizing QC metrics across samples, creating shareable quality reports, or building automated QC pipelines.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
Exports publication-ready figures in various formats with proper resolution, sizing, and typography. Use when preparing figures for journal submission, creating vector graphics for presentations, or ensuring consistent figure styling across analyses.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
Perform differential expression analysis of miRNAs between conditions using DESeq2 or edgeR with small RNA-specific considerations. Use when identifying miRNAs that change between treatment groups, disease states, or developmental stages.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
Fast miRNA quantification with isomiR detection and A-to-I editing analysis using miRge3. Use when quantifying known miRNAs quickly or analyzing isomiR variants and RNA editing.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
Preprocess small RNA sequencing data with adapter trimming and size selection optimized for miRNA, piRNA, and other small RNAs. Use when preparing small RNA-seq reads for downstream quantification or discovery analysis.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
Predict miRNA target genes using sequence-based algorithms and database lookups. Use when identifying potential mRNA targets of differentially expressed or functionally important miRNAs.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
End-to-end alternative splicing analysis from FASTQ to differential splicing results. Aligns with STAR 2-pass mode, performs junction QC, runs rMATS-turbo for differential analysis, and generates sashimi visualizations. Use when performing comprehensive splicing analysis from raw RNA-seq data.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
Download sequencing data from NCBI SRA using the SRA toolkit. Use when downloading FASTQ files from SRA accessions, prefetching large datasets, or validating SRA downloads.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
Validate, gap-fill, and curate genome-scale metabolic models using memote for quality scores and COBRApy for manual curation. Ensure models meet SBML standards and produce biologically meaningful predictions. Use when improving draft models or preparing models for publication.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
End-to-end CRISPR screen analysis from FASTQ to hit genes. Orchestrates guide counting, QC, statistical analysis with MAGeCK, and hit calling with multiple methods. Use when analyzing pooled CRISPR screens from count data to hit calling.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
End-to-end GWAS workflow from VCF to association results. Covers PLINK QC, population structure correction, and association testing for case-control or quantitative traits. Use when running genome-wide association studies.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
End-to-end bisulfite sequencing workflow from FASTQ to differentially methylated regions. Covers Bismark alignment, methylation calling, and DMR detection with methylKit. Use when analyzing bisulfite sequencing data.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
End-to-end RNA-seq workflow from FASTQ files to differential expression results. Covers QC, quantification (Salmon or STAR+featureCounts), and DESeq2 analysis with visualization. Use when running RNA-seq from FASTQ to DE results.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
End-to-end single-cell RNA-seq workflow from 10X Genomics data to annotated cell types. Covers QC, normalization, clustering, marker detection, and cell type annotation. Use when analyzing single-cell RNA-seq data.
✳Claude Code>_Codex◈OpenClaw+1
By GPTomicsOriginal project
1,226 GitHub starsMIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
AI-powered analysis of T-cell exhaustion states, epigenetic scarring, stem-like T-cell populations, and checkpoint blockade response prediction in cancer immunotherapy.
✳Claude Code>_Codex◈OpenClaw+1
By FreedomIntelligenceOriginal project
MIT · FreeView skill
SkillData & Analytics
COPYRIGHT NOTICE
AI-powered analysis of cellular senescence for aging research, cancer therapy response, and senolytic drug development.
✳Claude Code>_Codex◈OpenClaw+1
By FreedomIntelligenceOriginal project
MIT · FreeView skill
SkillData & Analytics
GWAS Catalog Database
Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-values and summary statistics, for genetic epidemiology and polygenic risk scores.
◈OpenClaw
By Activer007Original project
7 GitHub starsMIT · FreeView skill
SkillData & Analytics
STRING Database
Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.
✳Claude Code>_Codex↗Cursor+1
By Activer007Original project
7 GitHub starsMIT · FreeView skill
SkillData & Analytics
gget
CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, genome downloads. For advanced BLAST/batch processing, use biopython. For multi-database integration, use...
◈OpenClaw
By BbgnsurfTechOriginal project
9 GitHub starsMIT · FreeView skill
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