SkillData & Analytics
Statistical Analysis & Quality Control
# Statistical Analysis & Quality Control
✳Claude Code>_Codex◈OpenClaw+1
By beita6969Original project
815 GitHub starsMIT · FreeView skill
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SkillData & Analytics
WikiPathways Enrichment
WikiPathways enrichment using clusterProfiler and rWikiPathways. Use when analyzing gene lists against community-curated open-source pathways. Performs over-representation analysis and GSEA for 30+ species.
✳Claude Code>_Codex◈OpenClaw+1
By David-Li0406Original project
3 GitHub starsApache-2.0 · FreeView skill
SkillData & Analytics
Arboreto
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed c...
◈OpenClaw
By DicklesworthstoneOriginal project
1,947 GitHub starsMIT · FreeView skill
SkillData & Analytics
UniProt Database
Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use this for direct HTTP/REST work or UniProt-specific control.
◈OpenClaw
By DicklesworthstoneOriginal project
1,947 GitHub starsMIT · FreeView skill
SkillData & Analytics
deg-and-marker-gene-heatmap-with-viridis-col-clustering
Generates a publication-ready heatmap for differentially expressed genes (DEGs) or marker genes using viridis colormap, column-only hierarchical clustering, and Arial font — applicable to any normalized gene expression matrix with genes as rows and samples/subclusters as columns.
✳Claude Code>_Codex◈OpenClaw+1
By ECNU-ICALKOriginal project
609 GitHub starsMIT · FreeView skill
SkillData & Analytics
scRNA Preprocessing And Clustering
Standard scRNA-seq preprocessing and clustering with Scanpy. Use for QC, normalization, HVG selection, PCA, neighbor graph construction, UMAP, Leiden clustering, and export of an analysis-ready AnnData object.
✳Claude Code>_Codex◈OpenClaw+1
By Runchuan-BUOriginal project
MIT · FreeView skill
SkillData & Analytics
InterPro Database
Query InterPro REST API for protein domain architecture, family classification, and member-DB integration. Search entries, retrieve a protein's domains, list family members, get taxonomic distribution, link to PDB. Unifies Pfam, PANTHER, PIRSF, PRINTS, PROSITE, SMART, CDD, NCBIfam. Use uniprot-pr...
✳Claude Code>_Codex◈OpenClaw+3
By jaechang-hitsOriginal project
199 GitHub starsCC-BY-4.0 · FreeView skill
SkillData & Analytics
Reactome Database — Biological Pathway Queries & Enrichment Analysis
Query Reactome pathways via REST: pathway queries, entity lookup, keyword search, gene list enrichment, hierarchy, cross-refs. Content + Analysis services. Python wrapper: reactome2py. For KEGG use kegg-database; for PPIs use string-database-ppi.
◈OpenClaw
By jaechang-hitsOriginal project
199 GitHub starsCC-BY-4.0 · FreeView skill
SkillData & Analytics
CZ CELLxGENE Census
Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.
◈OpenClaw
By ljchg12-hueOriginal project
1 GitHub starsMIT · FreeView skill
SkillData & Analytics
Molfeat - Molecular Featurization Hub
Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.
◈OpenClaw
By ljchg12-hueOriginal project
1 GitHub starsMIT · FreeView skill
SkillData & Analytics
Reactome Database
Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.
◈OpenClaw
By ljchg12-hueOriginal project
1 GitHub starsMIT · FreeView skill
SkillData & Analytics
Matchms
Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.
◈OpenClaw
By ljchg12-hueOriginal project
1 GitHub starsMIT · FreeView skill
SkillData & Analytics
PyDESeq2
Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.
◈OpenClaw
By MicrockOriginal project
224 GitHub starsMIT · FreeView skill
SkillData & Analytics
Reactome Analysis & Content Service
Query the Reactome database (Analysis and Content Services). Use when the user asks about pathway analysis, gene list enrichment, retrieving results by token, finding unmapped or not-found identifiers, mapping identifiers, reaction participants (inputs, outputs), pathway hierarchy (including top-...
◈OpenClaw
By mkurmanOriginal project
326 GitHub starsApache-2.0 · FreeView skill
SkillData & Analytics
TileDB-VCF
Efficient storage and retrieval of genomic variant data using TileDB. Scalable VCF/BCF ingestion, incremental sample addition, compressed storage, parallel queries, and export capabilities for population genomics.
◈OpenClaw
By mkurmanOriginal project
326 GitHub starsMIT · FreeView skill
SkillData & Analytics
🦖 Equity Scorer
An MCP server that provides on-demand skill loading for AI coding assistants.
◈OpenClaw
By modbenderOriginal project
17 GitHub starsMIT · FreeView skill
SkillData & Analytics
scvi-tools
This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, batch correction, dimensionality reduction, differential e...
✳Claude Code>_Codex↗Cursor+2
By plurigridOriginal project
26 GitHub starsMIT · FreeView skill
SkillData & Analytics
Statistical Analysis — 10 Skills
10 statistical analysis skills. Trigger: statistical tests, Bayesian analysis, hypothesis testing, sampling. Design: method guides covering assumptions, code, and result interpretation.
✳Claude Code>_Codex◈OpenClaw+1
By wentoraiOriginal project
307 GitHub starsMIT · FreeView skill
SkillData & Analytics
NCBI Datasets v2 API
Access genomes, genes, and taxonomy data via NCBI Datasets v2 API
◈OpenClaw
By wentoraiOriginal project
307 GitHub starsMIT · FreeView skill
SkillData & Analytics
BioC API for PMC Open Access
Access PMC Open Access articles in BioC format for text mining
◈OpenClaw
By wentoraiOriginal project
307 GitHub starsMIT · FreeView skill
SkillData & Analytics
LaminDB
This skill is applicable when using LaminDB. LaminDB is an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR-compliant. It is suitable for managing biological datasets (scRNA-seq, spatial transcriptomics, flow cytometry, etc.), tracking computatio...
◈OpenClaw
By aipochOriginal project
1,995 GitHub starsMIT · FreeView skill
SkillData & Analytics
COBRApy - Constraint-Based Reconstruction and Analysis
Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.
◈OpenClaw
By ljchg12-hueOriginal project
1 GitHub starsMIT · FreeView skill
SkillData & Analytics
DNAnexus Integration
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
◈OpenClaw
By MicrockOriginal project
224 GitHub starsMIT · FreeView skill
SkillData & Analytics
Optional BLAST (remote). Comment out if you do not want network calls.
A comprehensive toolbox for computational molecular biology; use it when you need programmatic sequence/structure parsing, batch bioinformatics pipelines, or automated NCBI/BLAST workflows.
✳Claude Code>_Codex◈OpenClaw+1
By aipochOriginal project
1,995 GitHub starsMIT · FreeView skill
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