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Using Dave AI

Agent skills

Reusable instructions for compatible AI agents.

How to use the library

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Counts cover every published resource in this section. A resource can belong to several fields and platforms.

Resources

56 resources
Search stays within agent skills.
Agent skill

Molecular Review Workflow

Generates academic reviews for molecules in diseases using PubMed research. Invoke when user needs biomedical literature review with Vancouver citation format.

OpenClawEducation & Research
aipoch1,995
MITView resource
Agent skill

PubMed Database

Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.

OpenClawData & Analytics
Dicklesworthstone1,169
MITView resource
Agent skill

biopython-phylo

Use Bio.Phylo to read/write phylogenetic trees and perform visualization and statistics; use when tree parsing/conversion, pruning/rerooting, distance calculation, or plotting is required.

OpenClawData & Analytics
aipoch1,995
MITView resource
Agent skill

biopython-entrez

Use Bio.Entrez to access NCBI databases (e.g., PubMed/GenBank) for searching, fetching summaries, and downloading records when your workflow needs to call the NCBI E-utilities API over the network.

ClaudeCodexOpenClawData & Analytics
aipoch1,995
MITView resource
Agent skill

biopython-advanced

Advanced Biopython modules for motifs, population genetics, sequence utilities, restriction analysis, clustering, and GenomeDiagram visualization; use when you need extended bioinformatics analysis beyond basic sequence I/O and alignment.

OpenClawData & Analytics
aipoch1,995
MITView resource
Agent skill

biopython-alignment

Sequence alignment and alignment file processing with Biopython (Bio.Align/Bio.AlignIO), triggered when you need global/local pairwise alignment, MSA read/write/format conversion, or alignment statistics/filtering.

OpenClawData & Analytics
aipoch1,995
MITView resource
Agent skill

Pairwise Sequence Alignment

Perform pairwise sequence alignment using Biopython Bio.Align.PairwiseAligner. Use when comparing two sequences, finding optimal alignments, scoring similarity, and identifying local or global matches between DNA, RNA, or protein sequences.

ClaudeCodexOpenClawData & Analytics
GPTomics1,226
MITView resource
Agent skill

Format Conversion

Convert between sequence file formats (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO. Use when changing file formats or preparing data for different tools.

ClaudeCodexOpenClawData & Analytics
GPTomics1,226
MITView resource
Agent skill

dbSNP Queries and rsID Normalization

Resolves rsIDs, navigates RsMergeArch/SNPHistory merge chains, and converts between rsID, SPDI, HGVS, and VCF representations using the dbSNP Build 156 JSON architecture. Use when normalizing variant identifiers, joining variant databases by cluster ID, or tracking deprecated rsIDs through histor...

ClaudeCodexOpenClawData & Analytics
GPTomics1,226
MITView resource
Agent skill

Consensus Sequences

Generate consensus FASTA sequences by applying VCF variants to a reference using bcftools consensus. Use when creating sample-specific reference sequences or reconstructing haplotypes.

ClaudeCodexOpenClawData & Analytics
GPTomics1,226
MITView resource

Platform labels describe intended use. Read each resource's author credits, requirements and available access methods.