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Agent skills

Reusable instructions for compatible AI agents.

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Agent skill

🦖 Seq Wrangler

Sequence QC, alignment, and BAM processing. Wraps FastQC, BWA/Bowtie2, SAMtools for automated read-to-BAM pipelines.

OpenClawData & Analytics
ClawBio
MITView resource
Agent skill

FASTQ quality report

Analyze DNA, RNA, and protein sequences with alignment, variant calling, and expression analysis pipelines.

OpenClawData & Analytics
clawic20
MITView resource
Agent skill

cfDNA Preprocessing

Decides how to preprocess plasma cfDNA sequencing data so the recoverable signal survives - library-prep-aware fragment expectations (dsDNA vs ssDNA/adaptase prep), UMI/duplex consensus with fgbio (ExtractUmisFromBam, GroupReadsByUmi --strategy paired for duplex, CallMolecularConsensusReads vs Ca...

ClaudeCodexOpenClawEducation & Research
GPTomics898
MITView resource
Agent skill

Snakemake Workflows

Build reproducible bioinformatics pipelines with Snakemake using rules, wildcards, and automatic dependency resolution. Use when creating Python-based workflows, automating multi-step analyses with make-like dependency tracking, or running pipelines on HPC clusters with SLURM.

ClaudeCodexOpenClawData & Analytics
GPTomics898
MITView resource
Agent skill

Genome Assembly Pipeline

Orchestrates an end-to-end de novo genome assembly project, routing each step to the right genome-assembly skill rather than restating it. Profiles the genome first (k-mer spectrum -> size, heterozygosity, ploidy), QCs reads, chooses an assembly path by data type (SPAdes for Illumina, Flye for no...

ClaudeCodexOpenClawEducation & Research
GPTomics898
MITView resource
Agent skill · Reference

seq-wrangler

Agent skill for Data Scientist, ML / AI Engineer, Researcher, published by diegosouzapw. Project details and file access are provided by the publisher.

OpenClawData & Analytics
diegosouzapw45
Not specifiedView resource
Agent skill · Reference

alignment-and-mapping

Agent skill for Data Scientist, ML / AI Engineer, Researcher, published by BioTender-max. Project details and file access are provided by the publisher.

Data & Analytics
BioTender-max
Not specifiedView resource
Agent skill · Reference

seq-wrangler

Agent skill for Data Scientist, ML / AI Engineer, Researcher, published by Rudson-Oliveira. Project details and file access are provided by the publisher.

OpenClawData & Analytics
Rudson-Oliveira0
Not specifiedView resource
Agent skill · Reference

seq-wrangler

Agent skill for Data Scientist, ML / AI Engineer, Researcher, published by FridrichMethod. Project details and file access are provided by the publisher.

OpenClawData & Analytics
FridrichMethod3
MITView resource
Agent skill · Reference

seq-wrangler

Agent skill for Data Scientist, ML / AI Engineer, Researcher, published by MikeCheng1208. Project details and file access are provided by the publisher.

OpenClawData & Analytics
MikeCheng12081
Not specifiedView resource
Agent skill · Reference

ngs-analysis

Agent skill for Researcher, Data Scientist, Clinical Research, published by FridrichMethod. Project details and file access are provided by the publisher.

OpenClawEducation & Research
FridrichMethod3
ProprietaryView resource
Agent skill · Reference

bio-cfdna-preprocessing

Agent skill for Researcher, Clinical Research, Data Scientist, published by Rudson-Oliveira. Project details and file access are provided by the publisher.

Education & Research
Rudson-Oliveira0
Not specifiedView resource

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