Guide to KEGG pathway enrichment for DEG results. Covers ORA vs GSEA, mandatory directionality splitting, KEGG organism codes, API failure handling with offline fallbacks, cross-condition comparisons, and answer-first reporting. Consult when running enrichment with clusterProfiler or gseapy.
ClaudeCodexOpenClawData & Analytics
Run pathway and gene-set enrichment analysis on gene lists or ranked gene data, then interpret the results. Use whenever the user has a set of genes (differentially expressed genes from PyDESeq2/Scanpy, CRISPR-screen hits, cluster marker genes, proteomics hits) and wants to know which biological ...
ClaudeCodexOpenClawData & Analytics
K-Dense-AI
Convert between gene identifier systems including Ensembl, Entrez, HGNC symbols, and UniProt. Use when you need to map IDs for pathway analysis or to match different data sources.
ClaudeCodexOpenClawData & Analytics
**Step 5: Analysis system design (分析方法体系构建)**
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Runchuan-BU
Agent skill for Data Analyst, Business Intelligence Analyst, Researcher, published by BioTender-max. Project details and file access are provided by the publisher.
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Agent skill for Data Scientist, Business Intelligence Analyst, Researcher, published by Rudson-Oliveira. Project details and file access are provided by the publisher.
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Agent skill for Data Scientist, Business Intelligence Analyst, Researcher, published by Rudson-Oliveira. Project details and file access are provided by the publisher.
OpenClawData & Analytics
Agent skill for Researcher, Data Scientist, Business Intelligence Analyst, published by FridrichMethod. Project details and file access are provided by the publisher.
Education & Research
Agent skill for Data Scientist, Business Intelligence Analyst, Researcher, published by FridrichMethod. Project details and file access are provided by the publisher.
OpenClawData & Analytics
Agent skill for Researcher, Data Scientist, Business Intelligence Analyst, published by FridrichMethod. Project details and file access are provided by the publisher.
Education & Research
Agent skill for Data Scientist, Business Intelligence Analyst, Researcher, published by KunanonJ. Project details and file access are provided by the publisher.
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KunanonJ