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Reusable instructions for compatible AI agents.
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Filter reads by quality scores, length, and N content using Trimmomatic and fastp. Apply sliding window trimming, remove low-quality bases from read ends, and discard reads below thresholds. Use when reads have poor quality tails or require minimum quality for downstream analysis.
Remove sequencing adapters from FASTQ files using Cutadapt and Trimmomatic. Supports single-end and paired-end reads, Illumina TruSeq, Nextera, and custom adapter sequences. Use when FastQC shows adapter contamination or before alignment of short reads.
Sequence QC, alignment, and BAM processing. Wraps FastQC, BWA/Bowtie2, SAMtools for automated read-to-BAM pipelines.
Workflows for RNA-seq, GWAS, and variant calling in genomic research
Remove sequencing adapters from FASTQ files using Cutadapt and Trimmomatic. Supports single-end and paired-end reads, Illumina TruSeq, Nextera, and custom adapter sequences. Use when FastQC shows adapter contamination or before alignment of short reads.
Agent skill for Data Scientist, Researcher, published by GPTomics. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, Researcher, published by diegosouzapw. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, published by Rudson-Oliveira. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, Business Intelligence Analyst, Researcher, published by FridrichMethod. Project details and file access are provided by the publisher.
Agent skill for Researcher, Data Scientist, Business Intelligence Analyst, published by FridrichMethod. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, Researcher, published by BioTender-max. Project details and file access are provided by the publisher.
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